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Proteome Software FAQ and Resource Center

Welcome to the Proteome Software Frequently Asked Questions (FAQ) and Resource Center!

Here at Proteome Software, we strive to provide the proteomics community with the tools necessary for confident protein identification and analysis. This Wiki page is just one more way for us to connect you with a helpful database of knowledge. We have FAQs for our Scaffold Software Suite, an extensive Proteomics and Bioinformatics Resource Library, and discussion forums on every page to help you find exactly what you're looking for. The navigation bar on the left side of the page can get you started in the right direction.

To join our Wikispaces, you can request membership here. It only takes a few moments, and a Proteome Software representative will be in touch with you shortly to address your request.

Your interest in proteomics and input about our programs help drive us to provide you with the best software and services possible. If you have any ideas, suggestions, questions, or comments you'd like us to hear, the Proteomics Forum at the top of this page is a great place for that. Feel free to jump into any of the existing discussions as well; collaboration only strengthens understanding across the field.

To contact us directly, our toll-free phone number is 1-800-944-6027 - we will answer your call Monday through Friday between 8am - 5pm PST (GMT -8), or you can e-mail us at

Thank you from all of us at the Proteome Software team!

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