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What's new in Scaffold 4.0?

  • Click this link to check out the NEW FEATURES guide!
  • The guide includes an overview of the LFDR scoring, new quantitative display options, protein grouping and clustering, FDR filtering tools, bulk operations, and enhanced gene ontology features

Getting Started with Scaffold

Downloading Scaffold

Installing Scaffold

Batch Mode

Linux Installation - libexpat parser

Connecting Scaffold to External Servers

Troubleshooting



Loading and Organizing Scaffold Data

Loading Data into Scaffold

Using X! Tandem

Using MuDPIT

Organizing Data in Scaffold



Using Databases

FASTA

NCBI/GOA


Protein Information Lookup



Scaffold Pages and Displays

Pages and Panes

Display Filters

Protein Details



Calculations in Scaffold

Label-Free Quantitation

Normalization

Other Calculations



Exporting and Sharing Results from Scaffold

Exporting Results

Preparing and Publishing results